Basic Information
Locus ID:
Ftri18G23433
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1018898 | 1020289 | + | Ftri18G23433 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 47,300.34 Da | 61.10 | 86.13 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 35 | 72 | 1.1E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 254 | 355 | 4.8E-11 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 34 | 99 | 1.7E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 33 | 85 | 2.4E-8 | - |
| SMART | SM00256 | fbox_2 | 35 | 75 | 4.5E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 129 | 370 | 1.1E-24 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 29 | 79 | 11.140122 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43260.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_022037517.2 | F-box protein At5g65850-like [Helianthus annuus] | 0 |
| Q8S8Q9 | F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251UNU8 | Putative F-box domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0137821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026116 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g140770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12802, Sbi_jg53088 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8786 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026943 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34072, Sgl34296, Sgl39698 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001075, gene:ENSEOMG00000003759 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0015700, CQ.Regalona.r1.6BG0016560 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G23433 |