Basic Information
Locus ID:
Ftri18G22592
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 99483727 | 99487366 | + | Ftri18G22592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 50,844.19 Da | 59.89 | 94.21 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 201 | 244 | 2.54145E-21 | - |
| Pfam | PF02225 | PA domain | 51 | 110 | 8.0E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 201 | 244 | 6.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 257 | 1.71E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 50 | 84 | 4.97E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 249 | 1.8E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 29 | 120 | 1.3E-19 | - |
| SMART | SM00184 | ring_2 | 202 | 243 | 2.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 202 | 244 | 12.267982 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_021982855.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Helianthus annuus] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251TZN7 | Putative protease-associated (PA) RING/U-box zinc finger family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0260541 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology