Basic Information
Locus ID:
Ftri18G22231
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 105048478 | 105054921 | + | Ftri18G22231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 118,815.55 Da | 40.27 | 86.64 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 432 | 466 | 0.032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 509 | 0.039 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 6 | 35 | 3.3E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 861 | 893 | 0.043 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 762 | 1040 | 1.59E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 323 | 647 | 3.89E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 525 | 676 | 4.9E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 306 | 524 | 3.6E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 738 | 1034 | 2.3E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 379 | 419 | 37.0 | IPR001680 |
| SMART | SM00667 | Lish | 5 | 37 | 3.9E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 319 | 358 | 0.89 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 772 | 808 | 51.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 946 | 986 | 79.0 | IPR001680 |
| SMART | SM00668 | ctlh | 35 | 93 | 3.3E-9 | IPR006595 |
| SMART | SM00320 | WD40_4 | 811 | 851 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 466 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 510 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 854 | 893 | 8.0E-4 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 35 | 93 | 11.606474 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 5 | 37 | 10.188922 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 861 | 896 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 432 | 475 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 861 | 902 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 432 | 470 | 8.597424 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 453 | 467 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 880 | 894 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1043 | 1068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1048 | 1068 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_022003682.1 | topless-related protein 4 [Helianthus annuus] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251VIX4 | Putative LIS1 homology motif protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0058571 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology