Basic Information
Locus ID:
Ftri18G19627
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 62455467 | 62461053 | - | Ftri18G19627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 112,150.59 Da | 59.41 | 68.19 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 111 | 148 | 3.7E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 545 | 848 | 1.6E-38 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 542 | 854 | 1.04E-76 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 108 | 152 | 2.44E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 539 | 860 | 8.0E-83 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 102 | 153 | 1.4E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 111 | 148 | 11.542172 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 545 | 851 | 45.882648 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 546 | 561 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 111 | 148 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1019 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 966 | 1019 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_024970119.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Cynara cardunculus var. scolymus] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6NF82 | MYND-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_23750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology