Basic Information
Locus ID:
Ftri18G18222
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 102679723 | 102681046 | - | Ftri18G18222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 29,705.24 Da | 47.82 | 60.23 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 200 | 256 | 6.6E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 24 | 99 | 1.6E-18 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 151 | 194 | 4.6E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 90 | 144 | 7.19E-16 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 19 | 80 | 9.02E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 201 | 5.3E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 197 | 4.1E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 224 | 259 | 3.4E-17 | - |
| SMART | SM00184 | ring_2 | 153 | 194 | 2.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 195 | 11.736875 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 17 | 86 | 22.755138 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 89 | 152 | 26.912661 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_021978979.1 | zinc finger protein BRUTUS-like At1g74770 [Helianthus annuus] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251TZ54 | Putative RING finger and CHY zinc finger domain-containing protein 1 OS=Helianthus annuus OX=4232 GN=ZN363 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology