Basic Information
Locus ID:
Ftri18G17581
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 101804953 | 101805393 | - | Ftri18G17581 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 16,417.27 Da | 47.14 | 82.81 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 87 | 145 | 1.54767E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 86 | 145 | 2.5E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 10 | 73 | 6.5E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 3 | 145 | 5.31E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 146 | 1.1E-43 | - |
| SMART | SM00054 | efh_1 | 11 | 39 | 0.092 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 7.7E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 87 | 115 | 5.0E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 123 | 145 | 11.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 12.811786 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 83 | 118 | 14.513405 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 12.504936 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 119 | 146 | 12.449146 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 132 | 144 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 96 | 108 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_024971789.1 | probable calcium-binding protein CML15 [Cynara cardunculus var. scolymus] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A103YCD8 | Calcium-binding EF-hand OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_015171 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology