Basic Information
Locus ID:
Ftri18G15771
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 89944368 | 89950992 | + | Ftri18G15771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 40,905.81 Da | 52.09 | 86.04 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 9.82056E-33 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 338 | 380 | 4.111E-24 | - |
| Pfam | PF00627 | UBA/TS-N domain | 152 | 190 | 4.6E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 342 | 377 | 1.9E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 262 | 317 | 8.1E-24 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.1E-19 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 86 | 7.83E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 138 | 196 | 2.98E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 259 | 323 | 9.81E-23 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 322 | 384 | 4.64E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 334 | 381 | 4.6E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.3E-29 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 251 | 318 | 2.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 145 | 195 | 5.0E-22 | - |
| SMART | SM00727 | CBM | 260 | 303 | 1.1E-8 | IPR006636 |
| SMART | SM00165 | uba_6 | 152 | 192 | 2.7E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.2E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 342 | 379 | 5.0E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 385 | 8.9E-116 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 339 | 380 | 14.812021 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.065241 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 150 | 193 | 12.763767 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 288 | 310 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 368 | 383 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 367 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 336 | 352 | 1.2E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 103 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_024993557.1 | ubiquitin receptor RAD23d-like [Cynara cardunculus var. scolymus] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6Q517 | Ubiquitin receptor RAD23 OS=Mikania micrantha OX=192012 GN=E3N88_01916 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology