Basic Information
Locus ID:
Ftri18G15398
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Protein UNUSUAL FLORAL
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 105172987 | 105174066 | - | Ftri18G15398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 39,859.50 Da | 47.18 | 81.73 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 2 | 39 | 1.9E-9 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 145 | 184 | 2.2E-6 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 60 | 305 | 1.7E-18 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 69 | 7.06E-13 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 54 | 326 | 1.2E-16 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 41 | 1.6E-9 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 2.2E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 34 | 9.629941 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021984331.1 | F-box/kelch-repeat protein At5g15710 [Helianthus annuus] | 0 |
| TrEMBL | A0A251U052 | Putative F-box domain, Galactose oxidase, beta-propeller OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0274921 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25406, jg25407 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127810 |
| Apiaceae | Apium graveolens | 1 | Ag5G00134 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15398 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-732 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.450 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027755 |
| Salicaceae | Populus euphratica | 1 | populus_peu33748 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632975 |
| Solanaceae | Solanum chilense | 1 | SOLCI004631100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012683 |