Basic Information
Locus ID:
Ftri18G15101
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 93198139 | 93204538 | + | Ftri18G15101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 115,738.38 Da | 35.45 | 83.93 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 37 | 307 | 5.05877E-171 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 595 | 738 | 1.0E-20 | IPR011682 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 760 | 823 | 4.3E-17 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 906 | 1011 | 6.6E-10 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 350 | 441 | 3.2E-20 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 38 | 344 | 2.6E-87 | IPR000602 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 450 | 1014 | 7.69E-139 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 349 | 447 | 7.19E-27 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 26 | 345 | 1.17E-100 | IPR011330 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 313 | 391 | 1.7E-29 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 37 | 312 | 1.0E-113 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 467 | 590 | 5.0E-33 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 591 | 872 | 1.2E-86 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 892 | 1018 | 4.4E-35 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 392 | 447 | 2.1E-19 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 349 | 423 | 1.4E-19 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_024977580.1 | alpha-mannosidase At3g26720-like isoform X2 [Cynara cardunculus var. scolymus] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6LEW3 | Alpha-mannosidase OS=Mikania micrantha OX=192012 GN=E3N88_43454 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology