Basic Information
Locus ID:
Ftri18G13844
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 3564681 | 3570053 | + | Ftri18G13844 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 28,630.86 Da | 30.89 | 73.84 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 6 | 74 | 4.01965E-33 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 66 | 8.5E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 93 | 1.36E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 9.4E-12 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 4.7E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 12.782055 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 271 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_022015509.1 | binding partner of ACD11 1 [Helianthus annuus] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251RYP5 | Putative binding partner of acd11 1 OS=Helianthus annuus OX=4232 GN=BPA1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology