Basic Information
Locus ID:
Ftri18G13582
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 104097191 | 104099322 | + | Ftri18G13582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 24,596.86 Da | 51.04 | 78.58 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 77 | 2.14676E-42 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 6.8E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 85 | 170 | 1.4E-23 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 90 | 1.83E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 81 | 4.4E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.3E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 176 | 14.559312 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.155499 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.6E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.6E-29 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.6E-29 | IPR002100 |
| Coils | Coil | Coil | 149 | 176 | - | - |
| Coils | Coil | Coil | 86 | 113 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26310.1 | K-box region and MADS-box transcription factor family protein . Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants. | 0 |
| RefSeq | XP_021984167.1 | truncated transcription factor CAULIFLOWER D isoform X2 [Helianthus annuus] | 0 |
| I1GN76 | Protein VERNALIZATION 1 OS=Brachypodium distachyon OX=15368 GN=VRN1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2J6JLD4 | MADS-box transcription factor OS=Lactuca sativa OX=4236 GN=LSAT_4X81480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology