Basic Information
Locus ID:
Ftri18G13225
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 88117552 | 88121129 | - | Ftri18G13225 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 14,766.88 Da | 80.14 | 64.29 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 87 | 1.01233E-33 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 87 | 8.3E-18 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 88 | 2.68E-29 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 89 | 2.3E-28 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 117 | 2.7E-12 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 126 | 11.973826 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14400.1 | ubiquitin carrier protein 1. ubiquitin carrier protein | 0 |
| RefSeq | XP_009776752.1 | PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Nicotiana sylvestris] | 0 |
| P25865 | Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A059D008 | UBC core domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B00438 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Ftri18G13225.