Basic Information
Locus ID:
Ftri18G12429
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 105819074 | 105821437 | + | Ftri18G12429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 23,569.96 Da | 36.67 | 75.48 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 33 | 215 | 6.0E-48 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 144 | 190 | 6.67E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 144 | 215 | 2.6E-16 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 148 | 217 | 12.167351 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 108 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.2 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | XP_022015659.1 | auxin-responsive protein IAA21 [Helianthus annuus] | 0 |
| Q38826 | Auxin-responsive protein IAA8 OS=Arabidopsis thaliana OX=3702 GN=IAA8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251RW12 | Auxin-responsive protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0501151 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology