Basic Information
Locus ID:
Ftri18G10066
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 102811918 | 102814313 | + | Ftri18G10066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 54,080.62 Da | 55.11 | 79.46 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00268 | DEADc | 297 | 446 | 1.65698E-49 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 297 | 417 | 8.8E-28 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 248 | 418 | 2.06E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 231 | 419 | 4.4E-48 | IPR027417 |
| SMART | SM00487 | ultradead3 | 285 | 467 | 3.0E-22 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 297 | 416 | 17.475523 | IPR014001 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.2 | - | 0 |
| RefSeq | XP_021993130.1 | DEAD-box ATP-dependent RNA helicase 14 [Helianthus annuus] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6N5X6 | RNA helicase OS=Mikania micrantha OX=192012 GN=E3N88_25344 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology