Basic Information
Locus ID:
Ftri18G10027
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 107150338 | 107150828 | - | Ftri18G10027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 16,344.85 Da | 27.35 | 78.84 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 53 | 95 | 1.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 99 | 6.75E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 102 | 5.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 53 | 94 | 2.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 53 | 95 | 12.326995 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18930.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_023730158.1 | RING-H2 finger protein ATL79 [Lactuca sativa] | 0 |
| Q67YI6 | RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251U6L4 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0223731 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 2 | Ftri18G10027, Ftri1G16177 |
| Solanaceae | Solanum chilense | 1 | SOLCI002184900 |