Basic Information
Locus ID:
Ftri18G09994
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 79703356 | 79705467 | + | Ftri18G09994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 58,654.66 Da | 35.66 | 93.36 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 14 | 53 | 3.7E-14 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 160 | 179 | 0.021 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 72 | 118 | 1.9E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 90 | 472 | 1.65E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 51 | 6.3E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 52 | 294 | 8.1E-71 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 295 | 526 | 6.9E-70 | IPR032675 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021983188.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Helianthus annuus] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6PYQ8 | F-box domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_05196 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology