Basic Information
Locus ID:
Ftri18G08818
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 101128372 | 101129106 | - | Ftri18G08818 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 14,716.07 Da | 51.42 | 106.56 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 75 | 118 | 5.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 70 | 123 | 4.54E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 124 | 8.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 76 | 117 | 4.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 76 | 118 | 12.194218 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09100.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021978951.1 | uncharacterized protein LOC110874925 isoform X2 [Helianthus annuus] | 0 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2J6JX44 | RING-type domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_4X119180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology