Basic Information
Locus ID:
Ftri18G08656
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Lysosomal alpha-mannosidase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 104432212 | 104439481 | - | Ftri18G08656 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 114,261.35 Da | 39.74 | 82.37 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 37 | 314 | 0.0 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 599 | 812 | 1.4E-47 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 38 | 350 | 2.3E-96 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 355 | 446 | 2.1E-19 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 895 | 1002 | 1.0E-11 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 26 | 352 | 2.34E-109 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 457 | 1005 | 1.88E-142 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 355 | 452 | 3.6E-26 | IPR028995 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 37 | 318 | 2.7E-122 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 881 | 1008 | 5.6E-36 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 473 | 598 | 1.6E-32 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 599 | 861 | 1.5E-92 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 319 | 396 | 2.3E-28 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 397 | 452 | 1.2E-22 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 355 | 429 | 5.5E-21 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021984222.1 | probable alpha-mannosidase At5g13980 [Helianthus annuus] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251TZW6 | Alpha-mannosidase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0273861 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology