Basic Information
Locus ID:
Ftri18G08564
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 87191406 | 87195731 | + | Ftri18G08564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 66,619.46 Da | 52.89 | 66.72 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 217 | 269 | 1.54716E-24 | - |
| Pfam | PF00412 | LIM domain | 217 | 271 | 1.5E-7 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 366 | 580 | 7.4E-99 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 210 | 242 | 2.34E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 243 | 298 | 6.97E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 211 | 276 | 8.0E-12 | - |
| SMART | SM00726 | uim | 176 | 195 | 0.19 | IPR003903 |
| SMART | SM00132 | lim_4 | 216 | 268 | 1.5E-10 | IPR001781 |
| SMART | SM00726 | uim | 68 | 87 | 5.4 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 176 | 195 | 9.520647 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 215 | 275 | 11.5039 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 217 | 251 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 531 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_043608508.1 | protein DA1-related 1-like [Erigeron canadensis] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A251S6P4 | Putative LIM domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0472931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology