Basic Information
Locus ID:
Ftri18G07415
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 103480729 | 103489966 | - | Ftri18G07415 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 69,700.39 Da | 42.90 | 81.43 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 56 | 210 | 1.0377E-27 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 82 | 164 | 2.5E-10 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 422 | 493 | 4.4E-7 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 420 | 3.1E-12 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 360 | 1.5E-108 | IPR007012 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 360 | 5.23E-64 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 361 | 487 | 5.69E-36 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 16 | 209 | 1.68E-50 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 358 | 7.3E-159 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 7.3E-159 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 362 | 477 | 4.6E-28 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 4 | 601 | 9.2E-224 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 547 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_024968347.1 | nuclear poly(A) polymerase 1 [Cynara cardunculus var. scolymus] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6LNF4 | polynucleotide adenylyltransferase OS=Mikania micrantha OX=192012 GN=E3N88_39935 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology