Basic Information
Locus ID:
Ftri18G05095
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 106313798 | 106342857 | + | Ftri18G05095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 59,059.08 Da | 42.36 | 72.94 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 384 | 513 | 2.41318E-41 | IPR033734 |
| CDD | cd09612 | Jacalin | 15 | 145 | 7.76977E-44 | IPR033734 |
| CDD | cd09612 | Jacalin | 206 | 333 | 2.31641E-42 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 384 | 513 | 4.3E-28 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 15 | 144 | 1.3E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 206 | 333 | 2.3E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 196 | 335 | 1.83E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 374 | 512 | 3.66E-38 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 5 | 144 | 1.7E-42 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 184 | 336 | 3.0E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 360 | 513 | 6.6E-48 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 145 | 1.0E-53 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 15 | 146 | 9.9E-40 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 206 | 337 | 3.9E-35 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 384 | 514 | 1.5E-37 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 373 | 514 | 44.68045 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 195 | 337 | 46.856422 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 4 | 146 | 52.033741 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_011463712.1 | PREDICTED: jacalin-related lectin 3-like [Fragaria vesca subsp. vesca] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6NLD3 | Jacalin-type lectin domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_21413 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology