Basic Information
Locus ID:
Ftri18G02868
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 61956108 | 61964997 | - | Ftri18G02868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 79,525.93 Da | 51.42 | 69.68 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 259 | 412 | 1.71932E-31 | - |
| CDD | cd00821 | PH | 102 | 202 | 1.11068E-10 | - |
| Pfam | PF00169 | PH domain | 100 | 206 | 9.8E-12 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 259 | 402 | 9.8E-27 | IPR000198 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 258 | 451 | 1.22E-29 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 58 | 206 | 1.59E-17 | - |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 227 | 451 | 3.5E-39 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 89 | 208 | 9.5E-17 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 256 | 446 | 7.8E-26 | IPR000198 |
| SMART | SM00233 | PH_update | 100 | 209 | 3.4E-15 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 250 | 449 | 28.083359 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 99 | 207 | 15.4807 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 677 | - | - |
| Coils | Coil | Coil | 564 | 591 | - | - |
| Coils | Coil | Coil | 286 | 306 | - | - |
| Coils | Coil | Coil | 594 | 621 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24580.3 | - | 0 |
| RefSeq | XP_021981714.1 | rho GTPase-activating protein REN1 isoform X1 [Helianthus annuus] | 0 |
| F4JQZ3 | Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6NE74 | Rho GTPase-activating protein REN1-like OS=Mikania micrantha OX=192012 GN=E3N88_23753 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology