Basic Information
Locus ID:
Ftri18G02805
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 92683670 | 92687819 | - | Ftri18G02805 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 100,324.15 Da | 32.69 | 101.85 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 70 | 1.3E-7 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 292 | 314 | 0.38 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 513 | 568 | 1.9E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 244 | 266 | 0.15 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 706 | 912 | 3.3E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 700 | 915 | 1.03E-66 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 364 | 618 | 7.14E-52 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 79 | 424 | 5.81E-66 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 141 | 4.4E-21 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 785 | 918 | 9.1E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 669 | 784 | 3.4E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 231 | 4.3E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 333 | 629 | 2.2E-82 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 232 | 332 | 6.6E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 290 | 314 | 1.6 | IPR003591 |
| SMART | SM00220 | serkin_6 | 704 | 917 | 5.9E-15 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 169 | 192 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 193 | 217 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 555 | 578 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 242 | 266 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 338 | 362 | 27.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 704 | 918 | 36.781628 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 292 | 315 | 7.142103 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 830 | 842 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_021982588.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Helianthus annuus] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A251TVM7 | Putative leucine-rich receptor-like protein kinase family protein OS=Helianthus annuus OX=4232 GN=BAM3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology