Basic Information
Locus ID:
Ftri18G02175
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 85264412 | 85273468 | - | Ftri18G02175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 95,680.72 Da | 41.53 | 76.10 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 452 | 662 | 1.6E-49 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 210 | 302 | 1.7E-18 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 1 | 205 | 7.3E-45 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 744 | 849 | 2.1E-13 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 313 | 851 | 2.67E-150 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 209 | 304 | 1.5E-26 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 1 | 207 | 8.89E-59 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1180 | - | 320 | 430 | 6.8E-26 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 174 | 252 | 5.4E-29 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 173 | 4.7E-56 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 446 | 710 | 4.8E-100 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 253 | 309 | 9.4E-21 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 732 | 852 | 1.2E-35 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 210 | 284 | 4.0E-19 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_022012329.1 | alpha-mannosidase [Helianthus annuus] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251S9S9 | Alpha-mannosidase OS=Helianthus annuus OX=4232 GN=MANA PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology