Basic Information
Locus ID:
Ftri18G01725
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Hippocampus abundant transcript 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1322621 | 1329660 | - | Ftri18G01725 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 50,567.56 Da | 41.50 | 102.32 | 0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 15 | 416 | 7.62875E-49 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 15 | 399 | 1.9E-26 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 430 | 8.11E-38 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 8 | 436 | 8.6E-38 | IPR036259 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 323 | 344 | 5.8E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 61 | 77 | 5.8E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 348 | 368 | 5.8E-7 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 383 | 406 | 5.8E-7 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_022038327.1 | hippocampus abundant transcript-like protein 1 isoform X1 [Helianthus annuus] | 0 |
| Q96MC6 | Hippocampus abundant transcript 1 protein OS=Homo sapiens OX=9606 GN=MFSD14A PE=1 SV=2 | 0 | |
| TrEMBL | A0A251UQG6 | Putative major facilitator superfamily protein OS=Helianthus annuus OX=4232 GN=MEE15 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology