Basic Information
Locus ID:
Ftri18G01135
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 94050328 | 94055884 | - | Ftri18G01135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.81 | 73,472.50 Da | 49.74 | 67.48 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 389 | 518 | 3.02291E-64 | - |
| CDD | cd00201 | WW | 25 | 54 | 1.32131E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 194 | 364 | 1.3E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 401 | 509 | 2.7E-33 | IPR001650 |
| Pfam | PF00397 | WW domain | 24 | 54 | 1.1E-6 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 242 | 523 | 1.22E-73 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 54 | 1.59E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 19 | 71 | 5.9E-7 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 380 | 551 | 3.5E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 148 | 379 | 7.5E-88 | IPR027417 |
| SMART | SM00487 | ultradead3 | 189 | 392 | 4.7E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 429 | 509 | 1.1E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 23 | 56 | 8.8E-6 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 404 | 548 | 25.865398 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 201 | 375 | 30.440142 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 22 | 56 | 11.4475 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 170 | 198 | 11.960217 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 321 | 329 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 28 | 54 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021982299.1 | ATP-dependent RNA helicase-like protein DB10 [Helianthus annuus] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251TUZ5 | Putative ATP-dependent RNA helicase-like protein DB10 OS=Helianthus annuus OX=4232 GN=DB10 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology