Basic Information
Locus ID:
Ftri18G00746
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 102696269 | 102704030 | - | Ftri18G00746 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 138,779.92 Da | 45.36 | 81.96 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 21 | 154 | 2.17167E-20 | - |
| CDD | cd12108 | Hr-like | 578 | 717 | 1.01947E-18 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1088 | 1131 | 2.29872E-20 | - |
| Pfam | PF14599 | Zinc-ribbon | 1136 | 1193 | 3.1E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1087 | 1130 | 4.9E-9 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 962 | 1035 | 4.7E-12 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 21 | 156 | 6.9E-11 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1026 | 1081 | 1.57E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1082 | 1136 | 6.1E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1082 | 1133 | 7.1E-12 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 12 | 172 | 3.8E-19 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1160 | 1195 | 1.3E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 570 | 766 | 5.3E-15 | - |
| SMART | SM00184 | ring_2 | 1089 | 1130 | 6.6E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 955 | 1022 | 15.797895 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1025 | 1088 | 28.237637 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1089 | 1131 | 12.135206 | IPR001841 |
| Coils | Coil | Coil | 26 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021983950.1 | zinc finger protein BRUTUS-like At1g18910 [Helianthus annuus] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6NLB7 | Zinc finger protein BRUTUS-like At1g18910 OS=Mikania micrantha OX=192012 GN=E3N88_21030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology