Basic Information
Locus ID:
Ftri17G33792
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 6413733 | 6422144 | + | Ftri17G33792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 132,609.44 Da | 44.74 | 78.11 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 70 | 193 | 9.29908E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 211 | 539 | 8.17849E-168 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 213 | 534 | 4.8E-47 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 638 | 888 | 1.7E-76 | IPR024729 |
| Pfam | PF00917 | MATH domain | 75 | 194 | 9.1E-20 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 898 | 1109 | 3.1E-56 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 208 | 565 | 2.16E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 69 | 202 | 3.92E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 210 | 538 | 1.8E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 814 | 911 | 1.0E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 698 | 813 | 2.3E-46 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 66 | 209 | 4.4E-53 | IPR008974 |
| SMART | SM00061 | math_3 | 70 | 174 | 1.7E-21 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 68 | 193 | 37.880478 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 213 | 537 | 40.074657 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 214 | 229 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 453 | 470 | - | IPR018200 |
| Coils | Coil | Coil | 553 | 573 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_022005875.1 | ubiquitin carboxyl-terminal hydrolase 12 [Helianthus annuus] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251SJV0 | ubiquitinyl hydrolase 1 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0453171 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology