Basic Information
Locus ID:
Ftri17G33780
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 4508677 | 4517291 | + | Ftri17G33780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 90,711.50 Da | 37.40 | 100.58 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 255 | 297 | 1.60368E-28 | - |
| CDD | cd00165 | S4 | 607 | 668 | 1.06531E-7 | IPR002942 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 399 | 437 | 1.9E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 440 | 478 | 6.5E-8 | IPR000225 |
| Pfam | PF01479 | S4 domain | 610 | 643 | 2.2E-7 | IPR002942 |
| Pfam | PF00849 | RNA pseudouridylate synthase | 664 | 759 | 7.0E-15 | IPR006145 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 357 | 396 | 3.5E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 251 | 308 | 6.3E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 325 | 601 | 1.66E-48 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 311 | 1.24E-23 | - |
| SUPERFAMILY | SSF55174 | Alpha-L RNA-binding motif | 606 | 683 | 1.96E-14 | - |
| SUPERFAMILY | SSF55120 | Pseudouridine synthase | 663 | 816 | 9.12E-31 | IPR020103 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 125 | 2.7E-6 | IPR036537 |
| Gene3D | G3DSA:3.10.290.10 | - | 608 | 657 | 2.2E-13 | IPR036986 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 314 | 3.0E-24 | IPR013083 |
| Gene3D | G3DSA:3.30.2350.10 | Pseudouridine synthase | 771 | 824 | 6.0E-7 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 443 | 607 | 1.1E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.70.580 | - | 661 | 770 | 7.2E-29 | IPR020094 |
| Gene3D | G3DSA:1.25.10.10 | - | 328 | 442 | 1.0E-24 | IPR011989 |
| SMART | SM00185 | arm_5 | 398 | 438 | 0.0087 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 254 | 319 | 8.8E-28 | IPR003613 |
| SMART | SM00363 | s4_6 | 602 | 660 | 1.0E-8 | IPR002942 |
| SMART | SM00185 | arm_5 | 480 | 520 | 160.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 439 | 479 | 0.043 | IPR000225 |
| SMART | SM00185 | arm_5 | 357 | 397 | 4.2E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 521 | 561 | 440.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 409 | 451 | 9.8174 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 250 | 331 | 35.269573 | IPR003613 |
| ProSiteProfiles | PS50889 | S4 RNA-binding domain profile. | 611 | 670 | 11.901825 | - |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 368 | 410 | 13.4924 | IPR000225 |
| ProSitePatterns | PS01149 | Rsu family of pseudouridine synthase signature. | 712 | 726 | - | IPR018496 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_022006172.1 | U-box domain-containing protein 14 [Helianthus annuus] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2U1NKS3 | RING-type E3 ubiquitin transferase OS=Artemisia annua OX=35608 GN=CTI12_AA221730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34362 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18540 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025441 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g079150, BVRB_6g142930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12892, Sbi_jg52978 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8879 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017701 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl32899, Sgl38239 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000106, gene:ENSEOMG00000000156 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013090, CQ.Regalona.r1.6BG0013840 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30170710 |
| Apiaceae | Apium graveolens | 1 | Ag11G03754 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720767 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1564.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G33780 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G39140.1, AT3G43340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016747m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g005590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0563 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04220 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0459s00006.v1.0, Dusal.0755s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g06860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1085 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035041 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05292 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4939, BH01.4875, BH01.5123 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234110, gene-QOZ80_3BG0293890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0400870.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070677 |
| Poaceae | Oryza coarctata | 2 | Oco05G003210, Oco06G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g05806.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G477400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103097, Pt_Chr0601943 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G003940, Chr04G004260, Chr07G007270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G454900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG005060, gene_TRIDC4BG046640 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G036500.1, TraesCS4B02G269400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb004240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2873 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2047 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1902, evm.TU.LG14.193 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g01220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1593 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-26148, nbisL1-mrna-26150, nbisL1-mrna-26151 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7182 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4414 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.871 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000227 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2181 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9576 |
| Salicaceae | Populus euphratica | 2 | populus_peu06232, populus_peu20068 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614208 |
| Solanaceae | Solanum chilense | 1 | SOLCI003201000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004655 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13342 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1552 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16070.v3.1 |