Basic Information
Locus ID:
Ftri17G31092
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 8297885 | 8301340 | - | Ftri17G31092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 65,844.80 Da | 46.36 | 73.93 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 21 | 52 | 0.00122155 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 361 | 490 | 3.62886E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 166 | 336 | 4.2E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 373 | 481 | 5.4E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 53 | 1.71E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 214 | 497 | 8.5E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 120 | 352 | 3.0E-87 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 15 | 70 | 2.5E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 353 | 521 | 6.4E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 401 | 481 | 2.4E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 19 | 52 | 1.4E-4 | IPR001202 |
| SMART | SM00487 | ultradead3 | 161 | 364 | 9.9E-63 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 10.9747 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 376 | 520 | 25.11351 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 142 | 170 | 10.816846 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 173 | 347 | 30.358404 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 293 | 301 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 600 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 79 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_022005563.1 | DEAD-box ATP-dependent RNA helicase 14 [Helianthus annuus] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6Q6I1 | ATP-dependent RNA helicase-like protein DB10 OS=Mikania micrantha OX=192012 GN=E3N88_02687 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology