Basic Information
Locus ID:
Ftri17G28080
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 25661163 | 25664764 | + | Ftri17G28080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 97,049.27 Da | 42.59 | 87.29 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 549 | 824 | 2.75064E-93 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 64 | 2.0E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 315 | 348 | 37.0 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 544 | 818 | 6.9E-47 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 351 | 396 | 2.55E-7 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 289 | 1.36E-43 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 517 | 821 | 1.28E-76 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 316 | 415 | 7.1E-13 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 506 | 620 | 4.0E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 314 | 1.5E-68 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 621 | 841 | 1.6E-54 | - |
| SMART | SM00369 | LRR_typ_2 | 113 | 136 | 0.0069 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 362 | 385 | 52.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 543 | 825 | 9.7E-41 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 187 | 210 | 22.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 115 | 136 | 7.172906 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 543 | 825 | 41.346909 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 92 | 114 | 7.203709 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 549 | 572 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 668 | 680 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 438 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_024987239.1 | receptor-like kinase TMK4 [Cynara cardunculus var. scolymus] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6Q0D2 | Protein kinase domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_01220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology