Basic Information
Locus ID:
Ftri17G27602
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 4669915 | 4673609 | - | Ftri17G27602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 91,699.45 Da | 67.84 | 57.88 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 747 | 787 | 9.29372E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 745 | 792 | 1.9E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 747 | 793 | 2.17E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 734 | 798 | 4.9E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 748 | 787 | 10.704165 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 241 | - | - |
| Coils | Coil | Coil | 677 | 697 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022006126.1 | uncharacterized protein LOC110904595 [Helianthus annuus] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6LJI2 | RING-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_41859 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology