Basic Information
Locus ID:
Ftri17G26949
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 16656039 | 16656973 | - | Ftri17G26949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 33,067.13 Da | 30.61 | 89.00 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 45 | 1.4E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 64 | 5.42E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 44 | 4.7E-11 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 1.4E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 49 | 9.92138 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_022004446.1 | F-box protein CPR1 [Helianthus annuus] | 0 |
| Q9FGY4 | F-box protein At5g49610 OS=Arabidopsis thaliana OX=3702 GN=At5g49610 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2U1QAU2 | F-box domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA053030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 10 | Ag2G00504, Ag2G01353, Ag5G02626, Ag5G02641, Ag6G00433 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.88.V1.1 |
| Asteraceae | Flaveria trinervia | 9 | Ftri17G03779, Ftri17G11594, Ftri17G14448, Ftri17G18365 ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1649 |