Basic Information
Locus ID:
Ftri17G24985
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 2733693 | 2736265 | + | Ftri17G24985 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 25,192.20 Da | 48.74 | 64.53 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 108 | 162 | 1.07094E-11 | - |
| Pfam | PF12906 | RING-variant domain | 108 | 161 | 1.2E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 164 | 7.59E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 171 | 1.2E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 107 | 162 | 1.9E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 100 | 168 | 17.185698 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 60 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_022006387.1 | uncharacterized protein LOC110904826 [Helianthus annuus] | 0 |
| TrEMBL | A0A2J6LSJ1 | RING-CH-type domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_2X120201 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology