Basic Information
Locus ID:
Ftri17G24526
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 3342620 | 3345757 | + | Ftri17G24526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 52,884.36 Da | 35.51 | 86.53 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 346 | 466 | 4.20615E-24 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 353 | 467 | 1.5E-10 | IPR001229 |
| Pfam | PF00069 | Protein kinase domain | 26 | 298 | 1.8E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 303 | 3.24E-68 | IPR011009 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 327 | 467 | 8.9E-24 | IPR036404 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 108 | 1.1E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 110 | 320 | 3.0E-53 | - |
| Gene3D | G3DSA:2.100.10.30 | - | 325 | 473 | 6.4E-32 | IPR036404 |
| SMART | SM00220 | serkin_6 | 24 | 311 | 4.8E-23 | IPR000719 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 324 | 471 | 21.860855 | IPR001229 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 24 | 307 | 34.901806 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 30 | 61 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 152 | 164 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_022006296.2 | probable serine/threonine-protein kinase PBL28 isoform X1 [Helianthus annuus] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SLH0 | Putative jacalin-like lectin domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0458121 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 5 | Ftri17G09392, Ftri17G15571, Ftri17G24526, Ftri6G03856 ... |