Basic Information
Locus ID:
Ftri17G23364
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the 'GDSL' lipolytic enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 15018834 | 15020452 | + | Ftri17G23364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 40,049.67 Da | 26.34 | 94.83 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01837 | SGNH_plant_lipase_like | 33 | 343 | 3.39025E-125 | IPR035669 |
| Pfam | PF00657 | GDSL-like Lipase/Acylhydrolase | 33 | 342 | 1.5E-34 | IPR001087 |
| SUPERFAMILY | SSF52266 | SGNH hydrolase | 32 | 346 | 4.51E-9 | - |
| Gene3D | G3DSA:3.40.50.1110 | SGNH hydrolase | 20 | 351 | 5.5E-72 | IPR036514 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37690.1 | SGNH hydrolase-type esterase superfamily protein. | 0 |
| RefSeq | XP_022006988.1 | GDSL esterase/lipase At5g37690 [Helianthus annuus] | 0 |
| Q9FHQ1 | GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana OX=3702 GN=At5g37690 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251SLI5 | Putative SGNH hydrolase-type esterase domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0444661 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17094 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24711 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g039250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19491, Sbi_jg44047 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17901 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008644 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl35532 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000014457, gene:ENSEOMG00000022749 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0007800, CQ.Regalona.r1.2BG0009170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30190250 |
| Apiaceae | Apium graveolens | 1 | Ag3G01037 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G002650 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721129 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.528.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G23364, Ftri6G07441 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G37690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027814m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g04360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g030290.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0632 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0605 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2638 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.612 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021136 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13157 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1058, AH07.3359, BH06.1097, BH07.3185, CH06.1195 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0144500, gene-QOZ80_2BG0199980 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0612750.1, HORVU.MOREX.r3.7HG0670040.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024823, gene-QYE76_025072, gene-QYE76_029209 |
| Poaceae | Oryza coarctata | 3 | Oco03G020880, Oco11G006820, Oco12G006950 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g50000.1, LOC_Os06g14630.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G268000, gene-BS78_10G110400, gene-BS78_K034900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203422, Pt_Chr0404511 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G020860, Chr11G018400, Chr13G005110, Chr14G005140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G534700, Tel7E01G373800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG044830, gene_TRIDC6BG052470 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G294300.1, TraesCS6A02G294800.2 ... |
| Poaceae | Zea mays | 3 | Zm00001eb190200_P001, Zm00001eb280670_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-45504, nbis-gene-50335, nbis-gene-8811 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14363, Zma_g29462, Zma_g31702 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1555, evm.TU.LG07.1224 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.761 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1197 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4663 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6439 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.750 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012522 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5215 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13199 |
| Salicaceae | Populus euphratica | 2 | populus_peu09664, populus_peu24859 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615907 |
| Solanaceae | Solanum chilense | 1 | SOLCI002449900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004131 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12838 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1823 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18080.v3.1 |