Basic Information
Locus ID:
Ftri17G21327
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 3069792 | 3070948 | + | Ftri17G21327 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 40,639.52 Da | 78.01 | 66.41 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 187 | 231 | 4.43946E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 15 | 49 | 9.6E-15 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 186 | 228 | 1.6E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 262 | 360 | 9.8E-34 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 234 | 2.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 234 | 6.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 227 | 4.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 11.618851 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 373 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021973820.1 | probable E3 ubiquitin-protein ligase RHC2A [Helianthus annuus] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251UEL4 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=RHC2A PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology