Basic Information
Locus ID:
Ftri17G21180
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 28369468 | 28374346 | + | Ftri17G21180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 51,093.79 Da | 53.63 | 61.61 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 270 | 334 | 2.13653E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 38 | 123 | 8.47172E-45 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 40 | 123 | 2.3E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 270 | 337 | 3.2E-16 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 258 | 345 | 2.36E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 130 | 6.28E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 254 | 358 | 1.5E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 30 | 135 | 1.8E-28 | IPR036431 |
| SMART | SM00501 | bright_3 | 37 | 128 | 8.8E-28 | IPR001606 |
| SMART | SM00398 | hmgende2 | 269 | 338 | 3.6E-19 | IPR009071 |
| SMART | SM01014 | ARID_2 | 33 | 123 | 8.5E-28 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 270 | 337 | 15.371904 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 36 | 127 | 26.658846 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 400 | - | - |
| Coils | Coil | Coil | 319 | 346 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_022009216.1 | high mobility group B protein 15 isoform X1 [Helianthus annuus] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6LHF2 | High mobility group B protein 15-like OS=Mikania micrantha OX=192012 GN=E3N88_01186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology