Basic Information
Locus ID:
Ftri17G18182
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 5895330 | 5898118 | + | Ftri17G18182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 28,174.72 Da | 33.89 | 79.02 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 197 | 237 | 2.67517E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 196 | 242 | 4.3E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 243 | 8.08E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 247 | 1.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 198 | 236 | 2.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 198 | 237 | 11.161508 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022005977.1 | probable E3 ubiquitin-protein ligase LOG2 [Helianthus annuus] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SKZ8 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0454181 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology