Basic Information
Locus ID:
Ftri17G12387
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 59982692 | 59991245 | - | Ftri17G12387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 92,097.98 Da | 58.80 | 76.84 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 192 | 309 | 2.77329E-15 | - |
| CDD | cd00821 | PH | 21 | 120 | 4.23689E-12 | - |
| Pfam | PF00620 | RhoGAP domain | 191 | 274 | 7.8E-11 | IPR000198 |
| Pfam | PF00169 | PH domain | 20 | 124 | 2.0E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 568 | 648 | 1.6E-21 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 191 | 350 | 6.47E-16 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 16 | 133 | 1.48E-17 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 9 | 126 | 1.3E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 180 | 356 | 7.2E-16 | IPR008936 |
| SMART | SM00233 | PH_update | 19 | 127 | 2.4E-15 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 176 | 345 | 0.0058 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.7304 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 744 | - | - |
| Coils | Coil | Coil | 533 | 553 | - | - |
| Coils | Coil | Coil | 617 | 651 | - | - |
| Coils | Coil | Coil | 558 | 592 | - | - |
| Coils | Coil | Coil | 777 | 797 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_043632138.1 | rho GTPase-activating protein 7-like [Erigeron canadensis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2U1NQF1 | Pleckstrin homology domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA066910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology