Basic Information
Locus ID:
Ftri17G08511
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 9459664 | 9462730 | - | Ftri17G08511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 59,019.99 Da | 53.73 | 71.43 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 156 | 208 | 6.15785E-28 | - |
| Pfam | PF12315 | Protein DA1 | 305 | 514 | 1.0E-100 | IPR022087 |
| Pfam | PF00412 | LIM domain | 156 | 210 | 6.2E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 182 | 239 | 1.08E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 152 | 181 | 4.76E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 151 | 227 | 1.2E-14 | - |
| SMART | SM00132 | lim_4 | 155 | 207 | 4.1E-13 | IPR001781 |
| SMART | SM00726 | uim | 47 | 66 | 0.57 | IPR003903 |
| SMART | SM00726 | uim | 115 | 134 | 0.037 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 154 | 214 | 11.988999 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 115 | 134 | 9.135548 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 47 | 66 | 9.480533 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 156 | 190 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021983218.1 | protein DA1-related 1 [Helianthus annuus] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A251U0K3 | Putative zinc finger, LIM-type, Ubiquitin interacting motif, Protein DA1-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0264201 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology