Basic Information
Locus ID:
Ftri17G07168
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 1030617 | 1032495 | + | Ftri17G07168 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.30 | 24,503.63 Da | 57.29 | 77.55 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 169 | 209 | 1.11959E-15 | - |
| Pfam | PF13639 | Ring finger domain | 167 | 210 | 3.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 215 | 2.33E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 215 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 209 | 7.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 210 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 74 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47180.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_035839465.1 | E3 ubiquitin ligase BIG BROTHER-related-like isoform X1 [Helianthus annuus] | 0 |
| TrEMBL | A0A2J6LY82 | RING-type domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_2X133040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology