Basic Information
Locus ID:
Ftri17G03779
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 2107353 | 2108462 | + | Ftri17G03779 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 38,459.82 Da | 45.40 | 90.03 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 168 | 289 | 3.5E-6 | IPR013187 |
| Pfam | PF00646 | F-box domain | 6 | 42 | 3.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 62 | 6.67E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 41 | 9.1E-7 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 3.5E-5 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47150.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_043633331.1 | F-box protein At2g23160-like [Erigeron canadensis] | 0 |
| Q9SD58 | Putative F-box protein At3g47150 OS=Arabidopsis thaliana OX=3702 GN=At3g47150 PE=4 SV=2 | 0 | |
| TrEMBL | A0A5N6Q1W4 | F-box domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_01549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 10 | Ag2G00504, Ag2G01353, Ag5G02626, Ag5G02641, Ag6G00433 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.88.V1.1 |
| Asteraceae | Flaveria trinervia | 9 | Ftri17G03779, Ftri17G11594, Ftri17G14448, Ftri17G18365 ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1649 |