Basic Information
Locus ID:
Ftri17G03190
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Leucine-rich repeat receptor protein kinase exs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 974729 | 978770 | - | Ftri17G03190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 138,534.84 Da | 31.05 | 109.46 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 65 | 2.0E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 287 | 307 | 1.2 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 826 | 846 | 1.3 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 996 | 1265 | 6.6E-46 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 655 | 674 | 0.43 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 703 | 762 | 3.0E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 141 | 198 | 2.9E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 429 | 487 | 2.2E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 283 | 517 | 9.18E-41 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 359 | 7.14E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 624 | 886 | 3.51E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 974 | 1265 | 9.29E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 522 | 642 | 2.47E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 182 | 9.4E-44 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 956 | 1068 | 3.6E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 625 | 895 | 1.2E-72 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 359 | 624 | 5.7E-68 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 189 | 358 | 3.7E-45 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1069 | 1272 | 2.3E-59 | - |
| SMART | SM00369 | LRR_typ_2 | 212 | 236 | 92.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 582 | 605 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 187 | 211 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 115 | 139 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 749 | 772 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 284 | 307 | 31.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 212 | 238 | 230.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 653 | 672 | 33.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 823 | 852 | 520.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 284 | 305 | 140.0 | - |
| SMART | SM00220 | serkin_6 | 993 | 1273 | 5.9E-33 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 91 | 117 | 190.0 | - |
| SMART | SM00369 | LRR_typ_2 | 725 | 748 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 653 | 677 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 534 | 558 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 163 | 186 | 98.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 163 | 195 | 710.0 | - |
| SMART | SM00369 | LRR_typ_2 | 823 | 847 | 230.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 749 | 771 | 220.0 | - |
| SMART | SM00369 | LRR_typ_2 | 332 | 356 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 701 | 724 | 2.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 114 | 53.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 993 | 1273 | 38.929996 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1115 | 1127 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 999 | 1022 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 653 | 666 | 3.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 166 | 179 | 3.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_022006677.1 | leucine-rich repeat receptor protein kinase EMS1 [Helianthus annuus] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6Q9A0 | Protein kinase domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_03574 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |