Basic Information
Locus ID:
Ftri16G33942
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 3179080 | 3187524 | - | Ftri16G33942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 78,264.76 Da | 43.87 | 95.97 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 315 | 616 | 1.97461E-150 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 322 | 612 | 5.7E-29 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 315 | 617 | 1.99E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 271 | 3.66E-26 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 37 | 285 | 8.6E-19 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 313 | 616 | 1.5E-45 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 315 | 617 | 33.436199 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 38 | 302 | 19.226025 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 693 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_022039524.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Helianthus annuus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5N6N845 | glycerophosphodiester phosphodiesterase OS=Mikania micrantha OX=192012 GN=E3N88_26261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology