Basic Information
Locus ID:
Ftri16G32504
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Protein FAR1-RELATED SEQUENCE 5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 97294177 | 97306699 | - | Ftri16G32504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 82,441.67 Da | 41.28 | 78.64 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03101 | FAR1 DNA-binding domain | 2 | 84 | 1.7E-8 | IPR004330 |
| Pfam | PF10551 | MULE transposase domain | 191 | 284 | 5.6E-20 | IPR018289 |
| SMART | SM00575 | 26again6 | 476 | 503 | 0.0032 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 465 | 501 | 10.101061 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 705 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15090.1 | FRS (FAR1 Related Sequences) transcription factor family. Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3. | 0 |
| RefSeq | XP_021998170.1 | protein FAR1-RELATED SEQUENCE 5-like [Helianthus annuus] | 0 |
| Q9SWG3 | Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SJ10 | Protein FAR1-RELATED SEQUENCE OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0449641 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 44 | Ftri10G11617, Ftri10G29163, Ftri11G07361, Ftri11G18246 ... |