HalophFGD

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Basic Information
Locus ID: Ftri16G29932
Species & Taxonomic ID: Flaveria trinervia & 4227
Genome Assembly: GCA_025506515.1
Description: FAR1 DNA-binding domain
Maps and Mapping Data
Chromosome Start End Strand ID
chr16 10936697 10940966 + Ftri16G29932
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.37 60,679.40 Da 41.17 80.11 -0.37
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF03101 FAR1 DNA-binding domain 42 134 3.2E-11 IPR004330
ProSiteProfiles PS50966 Zinc finger SWIM-type profile. 325 363 8.617152 IPR007527
Gene Ontology
Molecular Function:
GO:0008270 (zinc ion binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_022040776.1 protein FAR1-RELATED SEQUENCE 5-like [Helianthus annuus] 0
TrEMBL A0A5N6NA31 Protein FAR1-RELATED SEQUENCE OS=Mikania micrantha OX=192012 GN=E3N88_21794 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Asteraceae Flaveria trinervia 44 Ftri10G11617, Ftri10G29163, Ftri11G07361, Ftri11G18246 ...
Ftri11G28932, Ftri12G02740, Ftri12G23135, Ftri12G30949, Ftri12G31882, Ftri13G00300, Ftri13G02788, Ftri13G14475, Ftri14G08431, Ftri14G17396, Ftri14G24276, Ftri15G17861, Ftri15G23176, Ftri15G26300, Ftri16G02063, Ftri16G05055, Ftri16G11082, Ftri16G11904, Ftri16G22178, Ftri16G22966, Ftri16G29932, Ftri16G32504, Ftri17G07867, Ftri2G01229, Ftri3G05569, Ftri4G07590, Ftri4G10090, Ftri4G15855, Ftri4G18820, Ftri5G06459, Ftri5G23007, Ftri6G19831, Ftri7G15215, Ftri7G18898, Ftri7G21702, Ftri8G00461, Ftri8G00988, FtriNA13922, FtriNA22465, FtriNA26942
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.