Basic Information
Locus ID:
Ftri16G25944
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 9480872 | 9482855 | - | Ftri16G25944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 69,362.84 Da | 43.37 | 76.54 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 463 | 539 | 8.02135E-49 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 470 | 515 | 1.8E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | 3.1E-53 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 469 | 537 | 4.97E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 458 | 545 | 3.1E-17 | IPR036638 |
| SMART | SM00353 | finulus | 472 | 521 | 3.9E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 466 | 515 | 16.926344 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 471 | - | - |
| Coils | Coil | Coil | 512 | 546 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_022039009.1 | transcription factor MYC2 [Helianthus annuus] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251USL5 | Putative basic helix-loop-helix (BHLH) DNA-binding family protein OS=Helianthus annuus OX=4232 GN=ATMYC2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology