Basic Information
Locus ID:
Ftri16G20217
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
zinc-ribbon family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 87472721 | 87473375 | - | Ftri16G20217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 12,160.01 Da | 63.06 | 70.75 | 0.01 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G44414.1 | 0 | |
| RefSeq | XP_023750916.1 | uncharacterized protein LOC111899287 [Lactuca sativa] | 0 |
| TrEMBL | A0A103XFK8 | zinc_ribbon_15 domain-containing protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008162 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6455 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23008 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4222, Sbi_jg49581 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5660 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000995 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10619, Sgl15872 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0010250, CQ.Regalona.r1.1BG0015570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC113462447, gene-LOC120112876 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G20217 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G44414.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012348m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g33530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g064820.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.896 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2314, BH05.2423, CH05.2512 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0371990, gene-QOZ80_5BG0419390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0075710.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014625 |
| Poaceae | Oryza coarctata | 1 | Oco09G010520 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g35970.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G156700 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G019840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G443500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG040450, gene_TRIDC1BG045930 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G271800.1.cds1, TraesCS1B02G281700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb348620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-14020 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27140 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.16 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g02990, gene.Posoc05g17020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1107 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5577 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.168 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20001 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9832 |
| Salicaceae | Populus euphratica | 1 | populus_peu32417 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641407 |
| Solanaceae | Solanum chilense | 1 | SOLCI001420900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023314 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3846 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2270 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05560.v3.1 |