Basic Information
Locus ID:
Ftri16G19596
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 72569925 | 72577307 | + | Ftri16G19596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 62,568.84 Da | 22.96 | 102.47 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 435 | 535 | 1.11285E-28 | - |
| CDD | cd00030 | C2 | 257 | 359 | 6.76807E-23 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 241 | 4.0E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 433 | 533 | 3.3E-25 | IPR000008 |
| Pfam | PF00168 | C2 domain | 255 | 359 | 2.1E-20 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 431 | 551 | 2.53E-34 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 253 | 384 | 2.53E-27 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 247 | 383 | 1.5E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 416 | 552 | 6.4E-36 | IPR035892 |
| SMART | SM00239 | C2_3c | 256 | 356 | 2.8E-18 | IPR000008 |
| SMART | SM00239 | C2_3c | 434 | 532 | 3.5E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 415 | 533 | 22.06138 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 242 | 30.74682 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 236 | 357 | 18.652563 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 498 | 506 | 1.7E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 476 | 489 | 1.7E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 450 | 462 | 1.7E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_022017302.1 | synaptotagmin-4 isoform X1 [Helianthus annuus] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2J6L9W2 | Synaptotagmin-5-like OS=Lactuca sativa OX=4236 GN=LSAT_6X113460 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology